bionty.Gene

class bionty.Gene(symbol: str | None, stable_id: str | None, ensembl_gene_id: str | None, ncbi_gene_ids: str | None, biotype: str | None, description: str | None, synonyms: str | None, organism: Organism | None, source: Source | None)

Bases: BioRecord, TracksRun, TracksUpdates

Genes - Ensembl, NCBI Gene.

Notes

For more info, see tutorials Manage biological registries and Gene.

Bulk create Gene records via from_values().

Examples

>>> record = bionty.Gene.from_source(symbol="TCF7", organism="human")

Simple fields

uid: str

A universal id (hash of selected field).

symbol: str | None

A unique short form of gene name.

stable_id: str | None

Stable ID of a gene that doesn’t have ensembl_gene_id, e.g. a yeast gene.

ensembl_gene_id: str | None

Ensembl gene stable ID, in the form ENS[organism prefix][feature type prefix][a unique eleven digit number].

ncbi_gene_ids: str | None

Bar-separated (|) NCBI Gene IDs that correspond to this Ensembl Gene ID. NCBI Gene ID, also known as Entrez Gene ID, in the form of numeric string, 1 to 9 digits.

biotype: str | None

Type of the gene.

synonyms: str | None

Bar-separated (|) synonyms that correspond to this gene.

description: str | None

Description of the gene.

created_at: datetime

Time of creation of record.

updated_at: datetime

Time of last update to record.

Methods